Variant report

Variant	rs4451828
Chromosome Location	chr13:93464952-93464953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1172688	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs16947937	0.92[CEU][hapmap]
rs2031585	0.81[YRI][hapmap]
rs2148225	0.82[CEU][hapmap]
rs2148229	0.89[JPT][hapmap]
rs2888772	0.85[CHB][hapmap]
rs7336987	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7988257	0.83[YRI][hapmap]
rs9301836	0.91[CEU][hapmap];0.95[CHB][hapmap]
rs9301839	0.91[CEU][hapmap]
rs9556225	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9556228	0.90[CEU][hapmap]
rs9556229	0.91[CEU][hapmap]
rs9561154	0.85[CHB][hapmap]
rs9561162	0.90[CHB][hapmap]
rs9561178	0.91[CEU][hapmap]
rs9584065	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs9584066	0.82[CEU][hapmap]
rs9584069	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv976068	chr13:93461178-93465653	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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