Variant report
| Variant | rs2148225 |
|---|---|
| Chromosome Location | chr13:93431573-93431574 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs12428589 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs12429680 | 1.00[CHB][hapmap] |
| rs12431303 | 1.00[CHB][hapmap] |
| rs1590556 | 0.89[ASN][1000 genomes] |
| rs1890198 | 1.00[CHB][hapmap] |
| rs2031585 | 0.95[CHB][hapmap] |
| rs2182367 | 1.00[CHB][hapmap] |
| rs35226443 | 0.85[ASN][1000 genomes] |
| rs4451828 | 0.82[CEU][hapmap] |
| rs59628939 | 0.84[EUR][1000 genomes] |
| rs7333121 | 1.00[CHB][hapmap] |
| rs7984465 | 0.84[ASN][1000 genomes] |
| rs7988257 | 0.95[CHB][hapmap] |
| rs8000315 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs9556215 | 1.00[CHB][hapmap] |
| rs9556216 | 0.95[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs9556217 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs9556218 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs9556219 | 1.00[CHB][hapmap] |
| rs9556222 | 1.00[CHB][hapmap] |
| rs9556224 | 0.84[ASN][1000 genomes] |
| rs9556227 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs9556228 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs9556229 | 1.00[CHB][hapmap];0.82[MEX][hapmap] |
| rs9561151 | 1.00[CHB][hapmap] |
| rs9561152 | 1.00[CHB][hapmap] |
| rs9561163 | 1.00[CHB][hapmap] |
| rs9561164 | 0.88[ASN][1000 genomes] |
| rs9561165 | 1.00[CHB][hapmap] |
| rs9561166 | 1.00[CHB][hapmap] |
| rs9561168 | 1.00[CHB][hapmap] |
| rs9561169 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs9561170 | 1.00[CHB][hapmap] |
| rs9561172 | 1.00[CHB][hapmap] |
| rs9561173 | 1.00[CHB][hapmap] |
| rs9561175 | 0.85[ASN][1000 genomes] |
| rs9561176 | 0.85[ASN][1000 genomes] |
| rs9561177 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs9561178 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs9561179 | 1.00[CHB][hapmap] |
| rs9561180 | 1.00[CHB][hapmap] |
| rs9561181 | 1.00[CHB][hapmap] |
| rs9561182 | 1.00[CHB][hapmap] |
| rs9561183 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv456072 | chr13:93419362-93506864 | Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv562746 | chr13:93419362-93506864 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
