Variant report

Variant	rs9561164
Chromosome Location	chr13:93458939-93458940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12428589	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12429124	1.00[EUR][1000 genomes]
rs12430678	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590556	0.99[ASN][1000 genomes]
rs1933194	1.00[EUR][1000 genomes]
rs35226443	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6492628	0.82[ASN][1000 genomes]
rs7984465	0.95[ASN][1000 genomes]
rs7987140	1.00[EUR][1000 genomes]
rs8000315	0.97[ASN][1000 genomes]
rs9556205	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9556216	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556217	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556218	0.99[ASN][1000 genomes]
rs9556224	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556227	0.97[ASN][1000 genomes]
rs9556228	0.96[ASN][1000 genomes]
rs9556234	1.00[EUR][1000 genomes]
rs9561127	1.00[EUR][1000 genomes]
rs9561128	1.00[EUR][1000 genomes]
rs9561143	1.00[EUR][1000 genomes]
rs9561169	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9561175	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561176	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561177	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561178	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93458000-93459200	Flanking Active TSS	Dnd41	blood
2	chr13:93458200-93459000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:93458200-93459000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:93458200-93459000	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr13:93458200-93459000	Active TSS	Brain Hippocampus Middle	brain
6	chr13:93458200-93459000	Active TSS	Rectal Smooth Muscle	rectum
7	chr13:93458200-93459000	Active TSS	Stomach Smooth Muscle	stomach
8	chr13:93458200-93459000	Active TSS	NHEK	skin
9	chr13:93458200-93459200	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr13:93458400-93459000	Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr13:93458400-93459000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:93458400-93459000	Active TSS	Brain Anterior Caudate	brain
13	chr13:93458400-93459000	Active TSS	Hela-S3	cervix
14	chr13:93458400-93460200	Enhancers	Fetal Kidney	kidney
15	chr13:93458400-93460600	Enhancers	NH-A	brain
16	chr13:93458400-93460800	Enhancers	Fetal Lung	lung
17	chr13:93458600-93459000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr13:93458600-93460000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:93458800-93459000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr13:93458800-93459000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr13:93458800-93459000	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr13:93458800-93459000	Enhancers	Duodenum Mucosa	Duodenum
23	chr13:93458800-93459000	Flanking Active TSS	Stomach Mucosa	stomach
24	chr13:93458800-93459200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:93458800-93459200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:93458800-93459200	Enhancers	Aorta	Aorta
27	chr13:93458800-93459200	Enhancers	Brain Angular Gyrus	brain
28	chr13:93458800-93459200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr13:93458800-93459200	Enhancers	NHDF-Ad	bronchial
30	chr13:93458800-93460000	Enhancers	NHLF	lung
31	chr13:93458800-93460000	Enhancers	Osteobl	bone
32	chr13:93458800-93460200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr13:93458800-93460200	Enhancers	Muscle Satellite Cultured Cells	--

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