Variant report

Variant	rs9556205
Chromosome Location	chr13:93388120-93388121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12428589	1.00[EUR][1000 genomes]
rs12429124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12430678	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1933194	0.82[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1999857	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs35226443	1.00[EUR][1000 genomes]
rs7321917	0.92[JPT][hapmap]
rs7334046	0.92[JPT][hapmap]
rs7338330	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs7338542	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs7491566	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs7987140	0.82[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7992127	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs9301832	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs9556206	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9556211	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9556216	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9556217	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9556224	1.00[EUR][1000 genomes]
rs9556234	1.00[EUR][1000 genomes]
rs9561126	0.88[JPT][hapmap]
rs9561127	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9561128	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9561130	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs9561131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9561136	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs9561142	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9561143	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9561164	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9561169	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9561175	1.00[EUR][1000 genomes]
rs9561176	1.00[EUR][1000 genomes]
rs9561177	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93387600-93388600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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