Variant report

Variant	rs7321917
Chromosome Location	chr13:93367367-93367368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12428589	1.00[EUR][1000 genomes]
rs12429124	0.91[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];1.00[EUR][1000 genomes]
rs12430678	1.00[EUR][1000 genomes]
rs1933194	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999857	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs35226443	1.00[EUR][1000 genomes]
rs7334046	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7338330	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7338542	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7491566	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7987140	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7992127	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8000315	0.90[MEX][hapmap]
rs9301832	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9556205	0.92[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9556206	0.92[JPT][hapmap]
rs9556211	0.91[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap]
rs9556216	1.00[EUR][1000 genomes]
rs9556217	1.00[EUR][1000 genomes]
rs9556224	1.00[EUR][1000 genomes]
rs9556234	1.00[EUR][1000 genomes]
rs9561099	0.82[GIH][hapmap];0.89[MEX][hapmap]
rs9561124	0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap]
rs9561126	1.00[JPT][hapmap]
rs9561127	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9561128	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9561130	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9561131	0.91[JPT][hapmap]
rs9561136	0.82[JPT][hapmap]
rs9561142	0.92[JPT][hapmap]
rs9561143	0.91[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs9561164	1.00[EUR][1000 genomes]
rs9561166	0.90[MEX][hapmap]
rs9561169	1.00[EUR][1000 genomes]
rs9561173	0.90[MEX][hapmap]
rs9561175	1.00[EUR][1000 genomes]
rs9561176	1.00[EUR][1000 genomes]
rs9561177	1.00[EUR][1000 genomes]
rs9561179	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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