Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12429124	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs1933194	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1999857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7321917	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7334046	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs7338330	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7338542	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7491566	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7987140	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9301832	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9556205	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs9556206	0.92[JPT][hapmap]
rs9556211	0.92[JPT][hapmap]
rs9561124	0.91[CHB][hapmap];0.83[JPT][hapmap];0.90[YRI][hapmap]
rs9561126	1.00[JPT][hapmap]
rs9561127	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9561128	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9561130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs9561131	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs9561136	0.83[JPT][hapmap]
rs9561142	0.92[JPT][hapmap]
rs9561143	0.92[JPT][hapmap]
rs9561151	0.81[CHB][hapmap]
rs9561168	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv983702	chr13:93291025-93353518	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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