Variant report

Variant	rs1933194
Chromosome Location	chr13:93371665-93371666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93369459..93371905-chr13:93878761..93880534,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183098	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12428589	1.00[EUR][1000 genomes]
rs12429124	0.81[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs12430678	1.00[EUR][1000 genomes]
rs1999857	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35226443	1.00[EUR][1000 genomes]
rs7321917	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7334046	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7338330	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7338542	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7491566	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7987140	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992127	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9301832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs9556205	0.82[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9556206	0.92[JPT][hapmap]
rs9556211	0.92[JPT][hapmap]
rs9556216	1.00[EUR][1000 genomes]
rs9556217	1.00[EUR][1000 genomes]
rs9556224	1.00[EUR][1000 genomes]
rs9556234	1.00[EUR][1000 genomes]
rs9561124	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs9561126	1.00[JPT][hapmap]
rs9561127	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561128	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs9561131	0.82[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs9561136	0.83[JPT][hapmap]
rs9561142	0.92[JPT][hapmap]
rs9561143	0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs9561151	0.81[CHB][hapmap]
rs9561164	1.00[EUR][1000 genomes]
rs9561168	0.81[CHB][hapmap]
rs9561169	1.00[EUR][1000 genomes]
rs9561175	1.00[EUR][1000 genomes]
rs9561176	1.00[EUR][1000 genomes]
rs9561177	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93371600-93372200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:93371600-93372600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr13:93371600-93374200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links