Variant report

Variant	rs12430678
Chromosome Location	chr13:93413246-93413247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12428589	1.00[EUR][1000 genomes]
rs12429124	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1933194	1.00[EUR][1000 genomes]
rs35226443	1.00[EUR][1000 genomes]
rs7987140	1.00[EUR][1000 genomes]
rs9556205	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9556216	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9556217	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9556224	1.00[EUR][1000 genomes]
rs9556234	1.00[EUR][1000 genomes]
rs9561127	1.00[EUR][1000 genomes]
rs9561128	1.00[EUR][1000 genomes]
rs9561131	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9561143	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9561164	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9561169	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9561175	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9561176	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9561177	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93412600-93415000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links