Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12428589	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429124	1.00[EUR][1000 genomes]
rs12430678	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590556	0.96[ASN][1000 genomes]
rs1933194	1.00[EUR][1000 genomes]
rs35226443	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492628	0.82[ASN][1000 genomes]
rs7984465	0.98[ASN][1000 genomes]
rs7987140	1.00[EUR][1000 genomes]
rs8000315	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9556205	1.00[EUR][1000 genomes]
rs9556216	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556217	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556218	0.96[ASN][1000 genomes]
rs9556224	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556227	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9556228	0.99[ASN][1000 genomes]
rs9556234	1.00[EUR][1000 genomes]
rs9561127	1.00[EUR][1000 genomes]
rs9561128	1.00[EUR][1000 genomes]
rs9561143	1.00[EUR][1000 genomes]
rs9561164	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561169	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9561176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561178	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900907	chr13:93472377-93597799	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93494000-93495200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:93494000-93495600	Enhancers	NH-A	brain
3	chr13:93494000-93496400	Enhancers	HMEC	breast
4	chr13:93494000-93496400	Enhancers	Osteobl	bone
5	chr13:93494000-93496600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr13:93494200-93496400	Enhancers	NHLF	lung
7	chr13:93494800-93495400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr13:93494800-93495800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:93494800-93496000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:93494800-93496800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:93495000-93495400	Weak transcription	HSMMtube	muscle
12	chr13:93495000-93496000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr13:93495000-93496600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:93495000-93496600	Enhancers	HSMM	muscle
15	chr13:93495000-93496800	Enhancers	Muscle Satellite Cultured Cells	--

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