Variant report
| Variant | rs35226443 |
|---|---|
| Chromosome Location | chr13:93480746-93480747 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12428589 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12429124 | 1.00[EUR][1000 genomes] |
| rs12430678 | 1.00[EUR][1000 genomes] |
| rs1590556 | 0.96[ASN][1000 genomes] |
| rs1933194 | 1.00[EUR][1000 genomes] |
| rs6492628 | 0.82[ASN][1000 genomes] |
| rs7984465 | 0.98[ASN][1000 genomes] |
| rs7987140 | 1.00[EUR][1000 genomes] |
| rs8000315 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9556205 | 1.00[EUR][1000 genomes] |
| rs9556216 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9556217 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9556218 | 0.96[ASN][1000 genomes] |
| rs9556224 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9556227 | 0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9556228 | 0.99[ASN][1000 genomes] |
| rs9556234 | 1.00[EUR][1000 genomes] |
| rs9561127 | 1.00[EUR][1000 genomes] |
| rs9561128 | 1.00[EUR][1000 genomes] |
| rs9561143 | 1.00[EUR][1000 genomes] |
| rs9561164 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9561169 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9561175 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9561176 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9561177 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9561178 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv456072 | chr13:93419362-93506864 | Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv562746 | chr13:93419362-93506864 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv900907 | chr13:93472377-93597799 | Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93480000-93481400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
