Variant report

Variant	rs9556228
Chromosome Location	chr13:93497879-93497880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93495939..93498709-chr13:93498716..93500691,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12428589	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs12429680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12431303	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1409266	0.95[YRI][hapmap]
rs1590556	0.97[ASN][1000 genomes]
rs16947935	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs16947937	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1890198	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2031585	0.91[CHB][hapmap]
rs2148225	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs2182367	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs35226443	0.99[ASN][1000 genomes]
rs4451828	0.90[CEU][hapmap]
rs56867090	0.98[EUR][1000 genomes]
rs6492628	0.83[ASN][1000 genomes]
rs67916048	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72642616	0.98[EUR][1000 genomes]
rs7333121	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7984465	0.98[ASN][1000 genomes]
rs7988257	0.95[CHB][hapmap]
rs8000315	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs9301836	0.83[CEU][hapmap]
rs9301839	1.00[CEU][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9556215	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs9556216	0.95[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs9556217	1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs9556218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9556219	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9556222	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9556224	0.98[ASN][1000 genomes]
rs9556227	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs9556229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9561151	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9561152	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs9561163	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs9561164	0.96[ASN][1000 genomes]
rs9561165	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9561166	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9561168	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9561169	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs9561170	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9561172	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9561173	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9561175	0.99[ASN][1000 genomes]
rs9561176	0.99[ASN][1000 genomes]
rs9561177	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs9561178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561179	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9561180	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9561181	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9561182	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9561183	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9584066	0.90[CEU][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9584069	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs9589632	0.95[YRI][hapmap]
rs9589633	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900907	chr13:93472377-93597799	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2760298	chr13:93496826-93738391	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93496600-93499600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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