Variant report

Variant	rs6492628
Chromosome Location	chr13:93473273-93473274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12428589	0.82[ASN][1000 genomes]
rs1590556	0.83[ASN][1000 genomes]
rs35226443	0.82[ASN][1000 genomes]
rs7336987	0.83[AFR][1000 genomes]
rs7984465	0.81[ASN][1000 genomes]
rs8000315	0.82[ASN][1000 genomes]
rs9556216	0.81[ASN][1000 genomes]
rs9556217	0.81[ASN][1000 genomes]
rs9556218	0.83[ASN][1000 genomes]
rs9556224	0.81[ASN][1000 genomes]
rs9556225	0.88[AFR][1000 genomes]
rs9556227	0.82[ASN][1000 genomes]
rs9556228	0.83[ASN][1000 genomes]
rs9561164	0.82[ASN][1000 genomes]
rs9561169	0.84[ASN][1000 genomes]
rs9561175	0.82[ASN][1000 genomes]
rs9561176	0.82[ASN][1000 genomes]
rs9561177	0.82[ASN][1000 genomes]
rs9561178	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900907	chr13:93472377-93597799	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93472400-93473400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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