Variant report

Variant	rs60229870
Chromosome Location	chr13:93455306-93455307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11619029	1.00[ASN][1000 genomes]
rs13378443	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1590556	0.87[EUR][1000 genomes]
rs16947935	1.00[ASN][1000 genomes]
rs16947937	1.00[ASN][1000 genomes]
rs17267453	1.00[ASN][1000 genomes]
rs56867090	1.00[ASN][1000 genomes]
rs59628939	1.00[ASN][1000 genomes]
rs67916048	1.00[ASN][1000 genomes]
rs72642616	1.00[ASN][1000 genomes]
rs9301839	1.00[ASN][1000 genomes]
rs9584066	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93454400-93458000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:93454600-93458200	Weak transcription	Aorta	Aorta
3	chr13:93454800-93458200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:93454800-93458400	Weak transcription	Fetal Kidney	kidney
5	chr13:93455000-93455600	Enhancers	Osteobl	bone
6	chr13:93455000-93457600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr13:93455000-93458200	Enhancers	NHLF	lung
8	chr13:93455200-93455400	Enhancers	Stomach Mucosa	stomach
9	chr13:93455200-93455400	Enhancers	HSMMtube	muscle
10	chr13:93455200-93455600	Enhancers	NHEK	skin
11	chr13:93455200-93457600	Enhancers	HSMM	muscle
12	chr13:93455200-93458000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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