Variant report
| Variant | rs11842684 |
|---|---|
| Chromosome Location | chr13:93396655-93396656 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:93388404..93390575-chr13:93396600..93398379,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11840577 | 1.00[JPT][hapmap] |
| rs1326104 | 1.00[JPT][hapmap] |
| rs13378443 | 1.00[JPT][hapmap] |
| rs1409266 | 1.00[JPT][hapmap] |
| rs16947937 | 1.00[JPT][hapmap] |
| rs8002249 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs9301839 | 1.00[JPT][hapmap] |
| rs9584066 | 1.00[JPT][hapmap] |
| rs9584069 | 1.00[JPT][hapmap] |
| rs9589627 | 1.00[JPT][hapmap] |
| rs9589630 | 1.00[JPT][hapmap] |
| rs9589632 | 1.00[JPT][hapmap] |
| rs9589633 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv526003 | chr13:93396655-93403783 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
