Variant report

Variant	rs8002249
Chromosome Location	chr13:93367969-93367970
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11840577	1.00[JPT][hapmap]
rs11842684	1.00[JPT][hapmap]
rs1326104	1.00[JPT][hapmap]
rs13378443	1.00[JPT][hapmap]
rs1409266	1.00[JPT][hapmap]
rs16947718	1.00[ASN][1000 genomes]
rs16947937	1.00[JPT][hapmap]
rs9301839	1.00[JPT][hapmap]
rs9584066	1.00[JPT][hapmap]
rs9584069	1.00[JPT][hapmap]
rs9589627	1.00[JPT][hapmap]
rs9589630	1.00[JPT][hapmap]
rs9589632	1.00[JPT][hapmap]
rs9589633	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93367600-93368200	Enhancers	Fetal Intestine Small	intestine
2	chr13:93367600-93369400	Enhancers	Fetal Lung	lung
3	chr13:93367800-93368200	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links