Variant report

Variant	rs13184145
Chromosome Location	chr5:54011443-54011444
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10051041	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1823052	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121129	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34314188	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34607327	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35820411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3886214	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3923238	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4460095	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4596337	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62356380	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71600852	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7724122	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7725001	0.91[ASN][1000 genomes]
rs7729102	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7730881	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965525	chr5:54010194-54018240	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54009400-54011600	Enhancers	Gastric	stomach
2	chr5:54009400-54011800	Enhancers	Fetal Heart	heart
3	chr5:54009400-54012000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:54009400-54012200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:54010200-54014400	Weak transcription	Adipose Nuclei	Adipose
6	chr5:54010400-54011600	Enhancers	Right Ventricle	heart
7	chr5:54010600-54014200	Weak transcription	Fetal Lung	lung
8	chr5:54010600-54014400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:54010600-54014400	Weak transcription	NHLF	lung
10	chr5:54010600-54014400	Weak transcription	Osteobl	bone
11	chr5:54010600-54015600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:54010600-54016600	Weak transcription	Aorta	Aorta
13	chr5:54011000-54014600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:54011200-54011600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:54011200-54011600	Enhancers	Right Atrium	heart
16	chr5:54011200-54011600	Enhancers	Stomach Mucosa	stomach
17	chr5:54011400-54014400	Weak transcription	Left Ventricle	heart
18	chr5:54011400-54014600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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