Variant report

Variant	rs2121129
Chromosome Location	chr5:54005622-54005623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10051041	0.93[ASN][1000 genomes]
rs13184145	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1823052	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34314188	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34607327	0.95[ASN][1000 genomes]
rs35820411	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3886214	0.93[ASN][1000 genomes]
rs3923238	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4460095	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4596337	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62356380	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71600852	0.93[ASN][1000 genomes]
rs7724122	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7725001	0.87[ASN][1000 genomes]
rs7729102	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7730881	0.93[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:53999800-54009400	Weak transcription	Aorta	Aorta
2	chr5:53999800-54009600	Weak transcription	Right Atrium	heart
3	chr5:54002600-54009600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:54003200-54009400	Weak transcription	Fetal Heart	heart
5	chr5:54005000-54005800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:54005600-54006200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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