Variant report

Variant	rs62356380
Chromosome Location	chr5:54013799-54013800
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10051041	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13184145	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1823052	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2121129	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34314188	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34607327	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35820411	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886214	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923238	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4460095	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4596337	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71600852	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725001	0.89[ASN][1000 genomes]
rs7729102	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730881	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965525	chr5:54010194-54018240	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54010200-54014400	Weak transcription	Adipose Nuclei	Adipose
2	chr5:54010600-54014200	Weak transcription	Fetal Lung	lung
3	chr5:54010600-54014400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:54010600-54014400	Weak transcription	NHLF	lung
5	chr5:54010600-54014400	Weak transcription	Osteobl	bone
6	chr5:54010600-54015600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:54010600-54016600	Weak transcription	Aorta	Aorta
8	chr5:54011000-54014600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:54011400-54014400	Weak transcription	Left Ventricle	heart
10	chr5:54011400-54014600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:54011600-54014400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:54011600-54014400	Weak transcription	Right Atrium	heart
13	chr5:54011600-54015000	Weak transcription	Right Ventricle	heart
14	chr5:54011600-54016400	Weak transcription	Gastric	stomach
15	chr5:54012000-54014400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:54012800-54014000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr5:54013000-54013800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:54013000-54014000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr5:54013000-54014400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:54013200-54014000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr5:54013200-54014000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr5:54013200-54020800	Enhancers	Fetal Heart	heart
23	chr5:54013400-54014600	Enhancers	GM12878-XiMat	blood

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