Variant report

Variant	rs13188923
Chromosome Location	chr5:111944473-111944474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11241175	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13162426	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13170674	0.91[ASN][1000 genomes]
rs13188230	0.95[ASN][1000 genomes]
rs13188321	0.91[ASN][1000 genomes]
rs35588281	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4957651	0.95[ASN][1000 genomes]
rs56101585	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66498118	0.91[ASN][1000 genomes]
rs66742123	0.91[ASN][1000 genomes]
rs67866550	0.95[ASN][1000 genomes]
rs67934699	0.89[ASN][1000 genomes]
rs6861523	0.91[ASN][1000 genomes]
rs6882543	0.89[ASN][1000 genomes]
rs6897239	0.91[ASN][1000 genomes]
rs71579191	0.91[ASN][1000 genomes]
rs71579192	0.91[ASN][1000 genomes]
rs71579194	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71579195	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7721308	0.91[ASN][1000 genomes]
rs7732983	0.96[ASN][1000 genomes]
rs9885446	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv819717	chr5:111935623-111947507	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv821026	chr5:111938702-111945437	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv599373	chr5:111938738-111944473	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1836543	chr5:111939151-111944473	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1836690	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1837328	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv1837524	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1837571	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv1837969	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv823180	chr5:111939337-111947460	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv823182	chr5:111939479-111947460	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv16282	chr5:111939492-111944907	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv1836219	chr5:111939614-111944473	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv1837456	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv1839406	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv1839469	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv1840814	chr5:111939614-111944473	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv1840838	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv599381	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
21	nsv599387	chr5:111940373-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv1835627	chr5:111940667-111944473	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv599390	chr5:111940954-111944473	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
24	nsv524230	chr5:111942769-111944473	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111941000-111952600	Weak transcription	Right Atrium	heart
2	chr5:111943200-111945200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr5:111943400-111945400	Active TSS	Fetal Intestine Large	intestine
4	chr5:111943600-111945400	Enhancers	Cortex derived primary cultured neurospheres	brain

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