Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11241175	0.91[ASN][1000 genomes]
rs13162426	0.91[ASN][1000 genomes]
rs13170674	0.98[ASN][1000 genomes]
rs13188230	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13188321	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13188923	0.89[ASN][1000 genomes]
rs35588281	0.91[ASN][1000 genomes]
rs4957651	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56101585	0.91[ASN][1000 genomes]
rs66498118	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66742123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67866550	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6861523	0.98[ASN][1000 genomes]
rs6882543	0.83[ASN][1000 genomes]
rs6897239	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71579191	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71579192	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71579194	0.86[ASN][1000 genomes]
rs71579195	0.89[ASN][1000 genomes]
rs7721308	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7732983	0.93[ASN][1000 genomes]
rs9885446	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111909400-111913800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:111909800-111913000	Enhancers	Fetal Stomach	stomach
3	chr5:111910800-111913600	Enhancers	Colon Smooth Muscle	Colon
4	chr5:111911200-111912800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:111911200-111913000	Enhancers	Rectal Smooth Muscle	rectum
6	chr5:111911400-111913600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr5:111911600-111912800	Enhancers	Adipose Nuclei	Adipose
8	chr5:111911600-111912800	Enhancers	Brain Anterior Caudate	brain
9	chr5:111911600-111912800	Enhancers	Fetal Muscle Leg	muscle
10	chr5:111911600-111913000	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr5:111911600-111913000	Enhancers	Right Atrium	heart
12	chr5:111911600-111913800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr5:111912000-111912800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:111912000-111912800	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr5:111912000-111913000	Enhancers	Ovary	ovary
16	chr5:111912200-111912800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr5:111912200-111912800	Enhancers	Lung	lung
18	chr5:111912400-111915400	Weak transcription	Fetal Heart	heart

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