Variant report

Variant	rs9885446
Chromosome Location	chr5:111916511-111916512
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11241175	0.93[ASN][1000 genomes]
rs13162426	0.93[ASN][1000 genomes]
rs13170674	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13188230	0.96[ASN][1000 genomes]
rs13188321	1.00[ASN][1000 genomes]
rs13188923	0.91[ASN][1000 genomes]
rs35588281	0.93[ASN][1000 genomes]
rs4957651	0.96[ASN][1000 genomes]
rs56101585	0.93[ASN][1000 genomes]
rs66498118	1.00[ASN][1000 genomes]
rs66742123	1.00[ASN][1000 genomes]
rs67866550	0.96[ASN][1000 genomes]
rs67934699	0.98[ASN][1000 genomes]
rs6861523	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882543	0.84[ASN][1000 genomes]
rs6897239	1.00[ASN][1000 genomes]
rs71579191	1.00[ASN][1000 genomes]
rs71579192	1.00[ASN][1000 genomes]
rs71579194	0.88[ASN][1000 genomes]
rs71579195	0.91[ASN][1000 genomes]
rs7721308	1.00[ASN][1000 genomes]
rs7732983	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv20349	chr5:111915807-111944317	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111915400-111917000	Enhancers	HSMMtube	muscle
2	chr5:111915800-111919200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:111916400-111918600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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