Variant report
| Variant | rs71579194 |
|---|---|
| Chromosome Location | chr5:111945976-111945977 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:111938998..111941379-chr5:111945188..111946889,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11241175 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13162426 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13170674 | 0.88[ASN][1000 genomes] |
| rs13188230 | 0.91[ASN][1000 genomes] |
| rs13188321 | 0.88[ASN][1000 genomes] |
| rs13188923 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs35588281 | 0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4957651 | 0.91[ASN][1000 genomes] |
| rs56101585 | 0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs66498118 | 0.88[ASN][1000 genomes] |
| rs66742123 | 0.88[ASN][1000 genomes] |
| rs67866550 | 0.91[ASN][1000 genomes] |
| rs67934699 | 0.86[ASN][1000 genomes] |
| rs6861523 | 0.88[ASN][1000 genomes] |
| rs6882543 | 0.85[ASN][1000 genomes] |
| rs6897239 | 0.88[ASN][1000 genomes] |
| rs71579191 | 0.88[ASN][1000 genomes] |
| rs71579192 | 0.88[ASN][1000 genomes] |
| rs71579195 | 0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7721308 | 0.88[ASN][1000 genomes] |
| rs7732983 | 0.93[ASN][1000 genomes] |
| rs9885446 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599368 | chr5:111399885-112032675 | Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv819717 | chr5:111935623-111947507 | Enhancers Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | nsv823180 | chr5:111939337-111947460 | Weak transcription Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv823182 | chr5:111939479-111947460 | Weak transcription Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:111941000-111952600 | Weak transcription | Right Atrium | heart |
| 2 | chr5:111945400-111952400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
