Variant report

Variant	rs13192154
Chromosome Location	chr6:163704560-163704561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163703768..163706009-chr6:163708926..163711873,3	K562	blood:
2	chr6:163704443..163706752-chr6:163730269..163732204,2	MCF-7	breast:
3	chr6:163703768..163705367-chr6:163708087..163710426,3	K562	blood:
4	chr6:163703327..163704855-chr6:163705499..163708258,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13190700	0.84[ASN][1000 genomes]
rs13192253	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13192267	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13194634	0.83[ASN][1000 genomes]
rs13194912	0.84[ASN][1000 genomes]
rs13197790	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198111	0.84[ASN][1000 genomes]
rs13200222	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13200354	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200617	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13201846	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202006	0.83[ASN][1000 genomes]
rs13202129	0.85[ASN][1000 genomes]
rs13202719	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13204553	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13205335	0.84[ASN][1000 genomes]
rs13209061	0.84[ASN][1000 genomes]
rs13214395	0.84[ASN][1000 genomes]
rs13216996	0.84[ASN][1000 genomes]
rs13217534	0.85[ASN][1000 genomes]
rs13219871	0.84[ASN][1000 genomes]
rs13219986	0.84[ASN][1000 genomes]
rs13220110	0.84[ASN][1000 genomes]
rs13220528	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220802	0.84[ASN][1000 genomes]
rs17470751	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163686000-163706000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:163701400-163705800	Weak transcription	Brain Anterior Caudate	brain
3	chr6:163701600-163705200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:163701800-163731200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:163702400-163705200	Weak transcription	Left Ventricle	heart
6	chr6:163702400-163710000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:163703400-163705000	Weak transcription	HUVEC	blood vessel
8	chr6:163704200-163704600	Enhancers	HSMMtube	muscle

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