Variant report

Variant	rs13202719
Chromosome Location	chr6:163710391-163710392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13192154	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13192253	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13197790	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13200222	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13200354	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13201846	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13204553	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13220528	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17470751	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs233	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13202719	QKI	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163701800-163731200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163705600-163711200	Weak transcription	Left Ventricle	heart
3	chr6:163706200-163711800	Weak transcription	HUVEC	blood vessel
4	chr6:163706800-163714200	Weak transcription	HSMMtube	muscle
5	chr6:163707000-163714200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:163707000-163718200	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:163707800-163714000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:163709000-163714200	Weak transcription	Brain Substantia Nigra	brain
9	chr6:163709200-163711400	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:163710000-163710400	Enhancers	Brain Anterior Caudate	brain
11	chr6:163710000-163710400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:163710000-163711400	Enhancers	Psoas Muscle	Psoas
13	chr6:163710200-163710400	Flanking Active TSS	Fetal Heart	heart
14	chr6:163710200-163710600	Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr6:163710200-163713000	Enhancers	Fetal Muscle Trunk	muscle
16	chr6:163710200-163714000	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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