Variant report

Variant	rs13204553
Chromosome Location	chr6:163707404-163707405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13192154	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13192253	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13197790	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13200222	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13200354	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13200617	0.83[AMR][1000 genomes]
rs13201846	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13202719	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13220528	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17470751	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs233	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163701800-163731200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163702400-163710000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:163705200-163708000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr6:163705400-163710200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:163705600-163709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:163705600-163711200	Weak transcription	Left Ventricle	heart
7	chr6:163706000-163707800	Enhancers	Brain Angular Gyrus	brain
8	chr6:163706000-163707800	Enhancers	Brain Cingulate Gyrus	brain
9	chr6:163706000-163710000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:163706200-163711800	Weak transcription	HUVEC	blood vessel
11	chr6:163706400-163708400	Enhancers	Brain Substantia Nigra	brain
12	chr6:163706800-163714200	Weak transcription	HSMMtube	muscle
13	chr6:163707000-163708200	Enhancers	Brain Anterior Caudate	brain
14	chr6:163707000-163708800	Enhancers	Brain Hippocampus Middle	brain
15	chr6:163707000-163714200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:163707000-163718200	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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