Variant report

Variant	rs1320369
Chromosome Location	chr4:159043846-159043847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:159042649..159044924-chr4:159061563..159064027,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11930131	1.00[YRI][hapmap]
rs11936237	1.00[YRI][hapmap]
rs11937145	1.00[AMR][1000 genomes]
rs11938314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17037047	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60928663	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1021067	chr4:158972282-159175475	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv880293	chr4:159012365-159049020	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159034200-159046200	Weak transcription	HUVEC	blood vessel
2	chr4:159041400-159044600	Enhancers	HSMM	muscle
3	chr4:159041600-159044200	Enhancers	Fetal Lung	lung
4	chr4:159042000-159044400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:159042000-159046800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:159042200-159048000	Weak transcription	Fetal Intestine Large	intestine
7	chr4:159042200-159051400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:159042400-159044000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:159042400-159044200	Enhancers	Osteobl	bone
10	chr4:159042400-159044600	Enhancers	NHDF-Ad	bronchial
11	chr4:159042400-159050800	Weak transcription	Aorta	Aorta
12	chr4:159042600-159044400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:159042600-159044600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:159042600-159053400	Weak transcription	Right Atrium	heart
15	chr4:159042600-159053600	Weak transcription	Brain Anterior Caudate	brain
16	chr4:159042600-159060200	Weak transcription	Brain Substantia Nigra	brain
17	chr4:159042800-159044000	Enhancers	NH-A	brain
18	chr4:159042800-159044400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:159042800-159044600	Enhancers	Colon Smooth Muscle	Colon
20	chr4:159042800-159044600	Enhancers	HSMMtube	muscle
21	chr4:159042800-159046400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr4:159042800-159046400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:159042800-159046400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr4:159042800-159047000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:159042800-159047200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:159042800-159047200	Weak transcription	Adipose Nuclei	Adipose
27	chr4:159042800-159047400	Weak transcription	HMEC	breast
28	chr4:159042800-159048000	Weak transcription	HepG2	liver
29	chr4:159042800-159049000	Weak transcription	Ovary	ovary
30	chr4:159042800-159050000	Weak transcription	Brain Hippocampus Middle	brain
31	chr4:159042800-159053400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr4:159042800-159053800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr4:159042800-159054800	Weak transcription	Fetal Heart	heart
34	chr4:159042800-159083600	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:159043000-159044000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:159043000-159044800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:159043200-159051200	Weak transcription	Left Ventricle	heart
38	chr4:159043400-159044400	Enhancers	Rectal Smooth Muscle	rectum
39	chr4:159043600-159044000	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr4:159043600-159044200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:159043800-159044200	Enhancers	Fetal Kidney	kidney
42	chr4:159043800-159044600	Enhancers	NHLF	lung
43	chr4:159043800-159045200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr4:159043800-159045200	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr4:159043800-159051400	Weak transcription	Fetal Stomach	stomach

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