Variant report

Variant	rs17037047
Chromosome Location	chr4:159047172-159047173
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11930131	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11936237	1.00[YRI][hapmap]
rs11937145	1.00[AMR][1000 genomes]
rs11938314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1320369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60928663	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1021067	chr4:158972282-159175475	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv880293	chr4:159012365-159049020	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159042200-159048000	Weak transcription	Fetal Intestine Large	intestine
2	chr4:159042200-159051400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:159042400-159050800	Weak transcription	Aorta	Aorta
4	chr4:159042600-159053400	Weak transcription	Right Atrium	heart
5	chr4:159042600-159053600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:159042600-159060200	Weak transcription	Brain Substantia Nigra	brain
7	chr4:159042800-159047200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:159042800-159047200	Weak transcription	Adipose Nuclei	Adipose
9	chr4:159042800-159047400	Weak transcription	HMEC	breast
10	chr4:159042800-159048000	Weak transcription	HepG2	liver
11	chr4:159042800-159049000	Weak transcription	Ovary	ovary
12	chr4:159042800-159050000	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:159042800-159053400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:159042800-159053800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:159042800-159054800	Weak transcription	Fetal Heart	heart
16	chr4:159042800-159083600	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:159043200-159051200	Weak transcription	Left Ventricle	heart
18	chr4:159043800-159051400	Weak transcription	Fetal Stomach	stomach
19	chr4:159044000-159048000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:159044000-159049800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:159044200-159052200	Weak transcription	Osteobl	bone
22	chr4:159044400-159047200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:159044400-159051800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:159044600-159048400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:159044600-159050600	Weak transcription	NHDF-Ad	bronchial
26	chr4:159044600-159050800	Weak transcription	NHLF	lung
27	chr4:159044600-159051000	Weak transcription	HSMMtube	muscle
28	chr4:159044800-159071000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:159044800-159073200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:159045200-159058600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr4:159045200-159059400	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr4:159045400-159050800	Strong transcription	HSMM	muscle
33	chr4:159045800-159052000	Weak transcription	Fetal Intestine Small	intestine
34	chr4:159046200-159047400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr4:159046200-159054200	Strong transcription	HUVEC	blood vessel
36	chr4:159046400-159047200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr4:159046400-159048600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:159046400-159053400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr4:159046600-159049600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:159046800-159047400	Enhancers	Fetal Kidney	kidney
41	chr4:159046800-159050800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr4:159046800-159053200	Weak transcription	Colon Smooth Muscle	Colon
43	chr4:159047000-159049000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:159047000-159049600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:159047000-159051200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr4:159047000-159080200	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links