Variant report

Variant	rs13215208
Chromosome Location	chr6:34948771-34948772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34947461..34949129-chr6:34952748..34955327,2	MCF-7	breast:
2	chr6:34854212..34855894-chr6:34947820..34949596,2	K562	blood:
3	chr6:34948492..34952297-chr6:34954153..34956386,4	K562	blood:
4	chr6:34943502..34945906-chr6:34947769..34950337,3	K562	blood:
5	chr6:34948492..34951112-chr6:34954153..34956114,2	K562	blood:

Variant related genes	Relation type
ENSG00000064995	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1018622	0.86[ASN][1000 genomes]
rs1051115	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11966100	0.89[ASN][1000 genomes]
rs12111129	0.86[ASN][1000 genomes]
rs13193526	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13195029	0.89[ASN][1000 genomes]
rs13195361	0.89[ASN][1000 genomes]
rs13196367	0.88[ASN][1000 genomes]
rs13196785	0.89[ASN][1000 genomes]
rs13200792	0.89[ASN][1000 genomes]
rs13205210	0.89[ASN][1000 genomes]
rs13207848	0.80[ASN][1000 genomes]
rs13208149	0.89[ASN][1000 genomes]
rs13210470	0.89[ASN][1000 genomes]
rs13213239	0.86[ASN][1000 genomes]
rs13213288	0.89[ASN][1000 genomes]
rs13213604	0.89[ASN][1000 genomes]
rs13214596	0.89[ASN][1000 genomes]
rs16895659	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2177380	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2296361	0.89[ASN][1000 genomes]
rs2296362	0.89[ASN][1000 genomes]
rs2395603	0.92[ASN][1000 genomes]
rs2395605	0.86[ASN][1000 genomes]
rs28360525	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs34355573	0.89[ASN][1000 genomes]
rs34480956	0.89[ASN][1000 genomes]
rs34681295	0.89[ASN][1000 genomes]
rs34840245	0.89[ASN][1000 genomes]
rs35203657	0.89[ASN][1000 genomes]
rs35285054	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35576171	0.89[ASN][1000 genomes]
rs35940001	0.89[ASN][1000 genomes]
rs3734261	0.84[ASN][1000 genomes]
rs3734266	0.89[ASN][1000 genomes]
rs41270044	0.84[ASN][1000 genomes]
rs4646933	0.89[ASN][1000 genomes]
rs57844307	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6457797	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6457798	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6904996	0.86[ASN][1000 genomes]
rs6910824	0.86[ASN][1000 genomes]
rs6914031	0.81[ASN][1000 genomes]
rs6914351	0.81[ASN][1000 genomes]
rs6925175	0.89[ASN][1000 genomes]
rs6926373	0.89[ASN][1000 genomes]
rs71567467	0.86[ASN][1000 genomes]
rs72896231	0.86[ASN][1000 genomes]
rs7739385	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7743724	0.80[ASN][1000 genomes]
rs7743949	0.89[ASN][1000 genomes]
rs7755354	0.86[ASN][1000 genomes]
rs7761391	0.88[ASN][1000 genomes]
rs7764126	0.86[ASN][1000 genomes]
rs912717	0.86[ASN][1000 genomes]
rs9296133	0.82[ASN][1000 genomes]
rs9462027	0.85[ASN][1000 genomes]
rs9469904	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1033135	chr6:34802652-34957093	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv508402	chr6:34840961-34951288	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv5257	chr6:34925313-34970101	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34895800-34949200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:34920400-34958600	Weak transcription	Colonic Mucosa	Colon
3	chr6:34921200-34949400	Weak transcription	Esophagus	oesophagus
4	chr6:34921600-34949400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:34922000-34953800	Weak transcription	Hela-S3	cervix
6	chr6:34922800-34950200	Weak transcription	Brain Germinal Matrix	brain
7	chr6:34925600-34984800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
9	chr6:34927200-34952200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:34928400-34949400	Weak transcription	Pancreas	Pancrea
11	chr6:34929400-34963400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:34929800-34953800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:34931600-34954800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:34932400-34949200	Weak transcription	Right Atrium	heart
15	chr6:34932400-34981800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:34932800-34962400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:34933000-34949400	Weak transcription	HSMM	muscle
18	chr6:34933000-34952600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:34935200-34950400	Weak transcription	Right Ventricle	heart
20	chr6:34935200-34954800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:34935200-34958800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:34938000-34949200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:34938200-34949000	Weak transcription	K562	blood
24	chr6:34938400-34949200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:34938400-34949200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:34938400-34949400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:34938400-34949400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:34938400-34949400	Weak transcription	Dnd41	blood
29	chr6:34938400-34949600	Weak transcription	Brain Angular Gyrus	brain
30	chr6:34938400-34949600	Weak transcription	Fetal Lung	lung
31	chr6:34938400-34954800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:34938600-34949000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:34938600-34949600	Weak transcription	Fetal Brain Female	brain
34	chr6:34938600-34949600	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:34938800-34949200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:34938800-34949200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:34938800-34949200	Weak transcription	Fetal Thymus	thymus
38	chr6:34938800-34949400	Weak transcription	Spleen	Spleen
39	chr6:34938800-34952800	Weak transcription	Aorta	Aorta
40	chr6:34939000-34949000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:34939000-34949200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:34939000-34949400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:34939000-34949400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:34939000-34949400	Weak transcription	Gastric	stomach
45	chr6:34939000-34949600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:34939000-34950400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr6:34939200-34949400	Weak transcription	Osteobl	bone
48	chr6:34939200-34950600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr6:34939400-34949000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:34939400-34949200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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