Variant report

Variant	rs13233548
Chromosome Location	chr7:14368977-14368978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10234589	0.83[ASN][1000 genomes]
rs12112152	0.94[ASN][1000 genomes]
rs12154315	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12672318	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13240040	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13242229	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17150049	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271267	0.85[EUR][1000 genomes]
rs55734480	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3388174	chr7:14348761-14369819	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14366800-14371800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:14368200-14369000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:14368200-14369000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:14368400-14369000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:14368800-14371800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:14368800-14375600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:14368800-14379000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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