Variant report

Variant	rs17150049
Chromosome Location	chr7:14368444-14368445
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10234589	0.82[CEU][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs12112152	0.80[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs12154315	0.89[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12672318	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13233548	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13240040	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13242229	1.00[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2271267	0.92[CEU][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs55734480	0.93[ASN][1000 genomes]
rs7798729	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3388174	chr7:14348761-14369819	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14366800-14371800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:14368000-14368800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:14368200-14368800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:14368200-14369000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:14368200-14369000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:14368400-14368800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:14368400-14369000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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