Variant report

Variant	rs13240040
Chromosome Location	chr7:14375977-14375978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10234589	0.92[CEU][hapmap];0.93[CHB][hapmap];0.80[ASN][1000 genomes]
rs12112152	0.82[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12154315	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs12672318	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13233548	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13242229	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17150049	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17168080	0.88[CHB][hapmap]
rs2271267	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[EUR][1000 genomes]
rs55734480	0.95[ASN][1000 genomes]
rs7798729	0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14368800-14379000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:14375400-14376400	Enhancers	Liver	Liver
3	chr7:14375600-14376400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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