Variant report

Variant	rs13242229
Chromosome Location	chr7:14379559-14379560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10234589	0.91[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12112152	0.81[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12154315	0.84[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs12672318	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13233548	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13240040	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17150049	1.00[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17168080	0.88[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs2271267	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55734480	0.86[ASN][1000 genomes]
rs7798729	0.96[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14376000-14380000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14376400-14379600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14378400-14382600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:14378600-14381600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:14378600-14381800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:14378600-14382000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:14378800-14382000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:14379200-14380000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:14379400-14380000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:14379400-14381000	Enhancers	Fetal Lung	lung
11	chr7:14379400-14382000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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