Variant report
| Variant | rs7798729 |
|---|---|
| Chromosome Location | chr7:14365616-14365617 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:14363416..14366270-chr7:14373533..14375322,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10234589 | 0.87[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs12112152 | 0.85[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12154315 | 0.85[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes] |
| rs12672318 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13233548 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13240040 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13242229 | 0.96[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17150049 | 0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17168017 | 1.00[YRI][hapmap] |
| rs17168080 | 1.00[YRI][hapmap] |
| rs17775555 | 1.00[YRI][hapmap] |
| rs2271267 | 0.96[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs55734480 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | esv3388174 | chr7:14348761-14369819 | Weak transcription Active TSS Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
