Variant report

Variant	rs13234650
Chromosome Location	chr7:25344405-25344406
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10951066	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11508474	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700601	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34301789	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34390682	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34621620	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34943627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35658085	0.90[EUR][1000 genomes]
rs35763211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35941234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36044676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56028402	0.88[EUR][1000 genomes]
rs56180026	0.97[ASN][1000 genomes]
rs57926354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59223799	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59781737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461859	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6966737	0.90[EUR][1000 genomes]
rs6975929	0.87[EUR][1000 genomes]
rs7783563	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785553	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799466	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799626	0.97[ASN][1000 genomes]
rs7799869	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805812	0.97[ASN][1000 genomes]
rs7806094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25339600-25355000	Weak transcription	Fetal Brain Male	brain
2	chr7:25342400-25344600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:25342400-25344600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:25342600-25344600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:25342600-25344600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:25342600-25344600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:25342600-25344800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:25342600-25344800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:25342600-25345000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr7:25342800-25344800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:25343000-25344800	Enhancers	Fetal Muscle Leg	muscle
12	chr7:25343000-25345000	Enhancers	Fetal Stomach	stomach
13	chr7:25343200-25344800	Enhancers	Fetal Intestine Small	intestine
14	chr7:25343200-25344800	Enhancers	Fetal Lung	lung
15	chr7:25343200-25347000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:25343200-25347600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr7:25343200-25348000	Weak transcription	Pancreas	Pancrea
18	chr7:25343400-25344600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr7:25343400-25344600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr7:25343600-25344600	Weak transcription	Lung	lung
21	chr7:25343600-25346800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:25343600-25348400	Weak transcription	Fetal Kidney	kidney
23	chr7:25343600-25353800	Weak transcription	Ovary	ovary
24	chr7:25343800-25344800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr7:25343800-25346000	Enhancers	Fetal Heart	heart
26	chr7:25343800-25347600	Weak transcription	Colon Smooth Muscle	Colon
27	chr7:25343800-25347800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:25343800-25347800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:25343800-25348400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr7:25344200-25344800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:25344400-25344600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:25344400-25344600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:25344400-25344600	Enhancers	Right Atrium	heart
34	chr7:25344400-25344600	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr7:25344400-25344600	Enhancers	Spleen	Spleen
36	chr7:25344400-25344800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr7:25344400-25344800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:25344400-25344800	Enhancers	Fetal Intestine Large	intestine
39	chr7:25344400-25347400	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr7:25344400-25347800	Weak transcription	Brain Germinal Matrix	brain

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