Variant report

Variant	rs6975929
Chromosome Location	chr7:25361017-25361018
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NPVF-1	chr7:25360921-25361135	XLOC_006379

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10951066	0.87[EUR][1000 genomes]
rs11508474	0.87[EUR][1000 genomes]
rs12700601	0.87[EUR][1000 genomes]
rs13234650	0.87[EUR][1000 genomes]
rs13238332	0.87[EUR][1000 genomes]
rs34301789	0.87[EUR][1000 genomes]
rs34390682	0.87[EUR][1000 genomes]
rs34621620	0.85[EUR][1000 genomes]
rs34943627	0.87[EUR][1000 genomes]
rs35658085	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35763211	0.87[EUR][1000 genomes]
rs35941234	0.87[EUR][1000 genomes]
rs36044676	0.87[EUR][1000 genomes]
rs56028402	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57926354	0.87[EUR][1000 genomes]
rs59223799	0.95[EUR][1000 genomes]
rs59781737	0.87[EUR][1000 genomes]
rs6461859	0.94[EUR][1000 genomes]
rs6966737	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7783563	0.87[EUR][1000 genomes]
rs7784574	0.84[EUR][1000 genomes]
rs7784944	0.87[EUR][1000 genomes]
rs7784951	0.87[EUR][1000 genomes]
rs7785553	0.87[EUR][1000 genomes]
rs7799466	0.94[EUR][1000 genomes]
rs7799869	0.94[EUR][1000 genomes]
rs7806094	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028018	chr7:25351950-25371700	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv464409	chr7:25352809-25371700	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
5	nsv464410	chr7:25354077-25371700	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	nsv606427	chr7:25354077-25371700	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
7	esv3477924	chr7:25360464-25362564	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv3477925	chr7:25360464-25362564	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv12021	chr7:25360557-25362570	Weak transcription Enhancers	lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv606428	chr7:25360909-25362030	Enhancers Weak transcription	lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv606429	chr7:25360909-25362501	Enhancers Weak transcription	lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25358200-25362200	Enhancers	Ovary	ovary
2	chr7:25358800-25361200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:25358800-25364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:25360000-25361600	Enhancers	Pancreas	Pancrea
5	chr7:25360000-25361600	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr7:25360600-25361400	Enhancers	Fetal Intestine Small	intestine
7	chr7:25360800-25361600	Enhancers	Duodenum Mucosa	Duodenum
8	chr7:25360800-25361600	Enhancers	Fetal Intestine Large	intestine
9	chr7:25361000-25361200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:25361000-25361200	Enhancers	Liver	Liver
11	chr7:25361000-25361400	Enhancers	Brain Substantia Nigra	brain
12	chr7:25361000-25361400	Enhancers	Fetal Heart	heart
13	chr7:25361000-25361400	Enhancers	Fetal Lung	lung
14	chr7:25361000-25361600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:25361000-25361600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr7:25361000-25361600	Enhancers	Rectal Mucosa Donor 29	rectum

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