Variant report

Variant	rs56028402
Chromosome Location	chr7:25359971-25359972
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25351069..25353821-chr7:25357786..25360548,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10951066	0.88[EUR][1000 genomes]
rs11508474	0.85[EUR][1000 genomes]
rs12700601	0.88[EUR][1000 genomes]
rs13234650	0.88[EUR][1000 genomes]
rs13238332	0.88[EUR][1000 genomes]
rs34301789	0.88[EUR][1000 genomes]
rs34390682	0.88[EUR][1000 genomes]
rs34621620	0.87[EUR][1000 genomes]
rs34943627	0.88[EUR][1000 genomes]
rs35658085	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35763211	0.88[EUR][1000 genomes]
rs35941234	0.88[EUR][1000 genomes]
rs36044676	0.88[EUR][1000 genomes]
rs57926354	0.88[EUR][1000 genomes]
rs59223799	0.97[EUR][1000 genomes]
rs59781737	0.88[EUR][1000 genomes]
rs6461859	0.95[EUR][1000 genomes]
rs6966737	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6975929	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783563	0.88[EUR][1000 genomes]
rs7784574	0.85[EUR][1000 genomes]
rs7784944	0.88[EUR][1000 genomes]
rs7784951	0.88[EUR][1000 genomes]
rs7785553	0.88[EUR][1000 genomes]
rs7799466	0.95[EUR][1000 genomes]
rs7799869	0.95[EUR][1000 genomes]
rs7806094	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028018	chr7:25351950-25371700	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv464409	chr7:25352809-25371700	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
5	nsv464410	chr7:25354077-25371700	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	nsv606427	chr7:25354077-25371700	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25354000-25360000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:25355000-25360000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:25355400-25361000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:25356200-25360000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:25356200-25360800	Weak transcription	Fetal Intestine Large	intestine
6	chr7:25356400-25361000	Weak transcription	Fetal Lung	lung
7	chr7:25357600-25360000	Weak transcription	Pancreas	Pancrea
8	chr7:25358200-25362200	Enhancers	Ovary	ovary
9	chr7:25358400-25360000	Enhancers	GM12878-XiMat	blood
10	chr7:25358400-25361000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr7:25358800-25361200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:25358800-25364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:25359600-25360600	Weak transcription	Fetal Intestine Small	intestine

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