Variant report

Variant	rs59223799
Chromosome Location	chr7:25352724-25352725
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25351069..25353821-chr7:25357786..25360548,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10951066	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11508474	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12700601	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13234650	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13238332	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34301789	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34390682	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34621620	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34943627	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35658085	0.98[EUR][1000 genomes]
rs35763211	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35941234	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36044676	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56028402	0.97[EUR][1000 genomes]
rs56180026	0.83[ASN][1000 genomes]
rs57926354	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59781737	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6461859	0.98[EUR][1000 genomes]
rs6966737	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6975929	0.95[EUR][1000 genomes]
rs7783563	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7784574	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7784944	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7784951	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7785553	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7799466	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7799626	0.83[ASN][1000 genomes]
rs7799869	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7805812	0.83[ASN][1000 genomes]
rs7806094	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028018	chr7:25351950-25371700	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25339600-25355000	Weak transcription	Fetal Brain Male	brain
2	chr7:25343600-25353800	Weak transcription	Ovary	ovary
3	chr7:25344600-25357200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:25349000-25354600	Weak transcription	Fetal Lung	lung
5	chr7:25349200-25354000	Weak transcription	Fetal Kidney	kidney
6	chr7:25349400-25353000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr7:25349400-25353600	Weak transcription	Stomach Mucosa	stomach
8	chr7:25349400-25353800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:25350400-25354000	Weak transcription	Brain Anterior Caudate	brain
10	chr7:25350600-25354600	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:25350800-25353200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:25351000-25353600	Weak transcription	Small Intestine	intestine
13	chr7:25351000-25358400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr7:25351200-25353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:25351400-25357200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:25351600-25358200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:25352400-25352800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr7:25352600-25352800	Enhancers	Brain Cingulate Gyrus	brain
19	chr7:25352600-25352800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr7:25352600-25354600	Enhancers	Pancreas	Pancrea
21	chr7:25352600-25355600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr7:25352600-25356200	Enhancers	Fetal Intestine Large	intestine
23	chr7:25352600-25357200	Enhancers	Fetal Intestine Small	intestine

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