Variant report

Variant	rs1323972
Chromosome Location	chr13:94056376-94056377
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1323989	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1359198	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1408211	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1445266	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1445275	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17234460	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17300206	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1924383	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1980727	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1987681	0.84[EUR][1000 genomes]
rs2038727	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2762082	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2762092	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2762120	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4771875	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4773744	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4773745	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4773746	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4773747	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72640517	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7329539	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7338402	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7997302	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs876808	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9301877	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9516228	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9524029	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9524038	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9524039	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9524045	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9524051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524053	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9524058	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9524061	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9524070	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9556289	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9556291	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9561336	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9561340	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9561346	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9561347	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs973302	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94047800-94057200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94053800-94058000	Weak transcription	Fetal Brain Male	brain
3	chr13:94054800-94058000	Weak transcription	Fetal Brain Female	brain
4	chr13:94055000-94063400	Weak transcription	Aorta	Aorta
5	chr13:94055400-94057400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:94055600-94058200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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