Variant report

Variant	rs9524038
Chromosome Location	chr13:94038182-94038183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs12430278	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12865188	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1323972	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1323989	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1359198	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1408208	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1408211	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1445266	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1445275	0.81[EUR][1000 genomes]
rs17234460	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17300206	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1924383	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1980727	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2025947	1.00[CEU][hapmap]
rs2038727	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2762082	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2762092	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2762120	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2762122	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3814277	1.00[CEU][hapmap]
rs4771875	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4773743	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4773744	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4773745	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4773746	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4773747	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs723850	0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72640517	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7329539	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7338402	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7994277	1.00[CEU][hapmap]
rs7997302	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8002366	1.00[CEU][hapmap]
rs876808	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9301877	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516225	1.00[CEU][hapmap]
rs9516228	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9524029	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9524036	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9524039	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9524045	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9524051	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9524053	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9524058	0.86[EUR][1000 genomes]
rs9524061	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9524070	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9524081	0.83[CEU][hapmap]
rs9556289	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9556291	0.81[EUR][1000 genomes]
rs9561315	1.00[CEU][hapmap]
rs9561322	1.00[CEU][hapmap]
rs9561326	1.00[CEU][hapmap]
rs9561329	1.00[CEU][hapmap]
rs9561334	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs9561335	0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9561336	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561340	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9561346	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9561347	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9561354	0.83[CEU][hapmap]
rs9561358	0.81[CEU][hapmap]
rs973302	1.00[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94008800-94042400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:94009400-94040400	Weak transcription	Aorta	Aorta
3	chr13:94014200-94038800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:94030800-94038600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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