Variant report

Variant	rs1980727
Chromosome Location	chr13:94077561-94077562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1323972	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1323989	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1359198	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1408211	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1445266	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1445271	0.84[ASN][1000 genomes]
rs1445272	0.84[ASN][1000 genomes]
rs1445273	0.84[ASN][1000 genomes]
rs1445275	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17234460	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.88[EUR][1000 genomes]
rs17300206	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1900050	0.84[ASN][1000 genomes]
rs1924383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1947077	0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs1947079	0.83[ASN][1000 genomes]
rs1987681	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2025947	0.91[CEU][hapmap]
rs2038727	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2590549	0.82[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];0.83[ASN][1000 genomes]
rs2590552	0.84[ASN][1000 genomes]
rs2762082	1.00[CEU][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2762092	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2762120	0.85[EUR][1000 genomes]
rs2813619	0.84[ASN][1000 genomes]
rs2813621	0.83[ASN][1000 genomes]
rs2813627	0.82[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap];0.82[LWK][hapmap];0.92[MEX][hapmap];0.97[MKK][hapmap];0.84[ASN][1000 genomes]
rs2813628	0.83[ASN][1000 genomes]
rs2813631	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2813636	0.84[ASN][1000 genomes]
rs3814277	0.91[CEU][hapmap]
rs4771875	0.90[CEU][hapmap];0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4773744	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4773745	0.91[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4773746	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4773747	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72640517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7329539	0.91[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.90[EUR][1000 genomes]
rs7338402	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7994277	0.91[CEU][hapmap]
rs7997302	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs8002366	0.91[CEU][hapmap]
rs876808	0.91[CEU][hapmap];0.91[MEX][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs895193	0.82[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs895194	0.84[ASN][1000 genomes]
rs9301877	0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[EUR][1000 genomes]
rs9301881	0.86[CHD][hapmap];0.83[JPT][hapmap]
rs9516225	0.91[CEU][hapmap]
rs9516228	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9524029	0.83[EUR][1000 genomes]
rs9524038	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9524039	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9524045	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9524051	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9524053	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9524058	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524059	0.82[EUR][1000 genomes]
rs9524061	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9524070	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9524075	0.86[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.82[LWK][hapmap];0.92[MEX][hapmap];0.82[MKK][hapmap];0.84[ASN][1000 genomes]
rs9524081	0.84[CEU][hapmap]
rs9556289	0.90[CEU][hapmap];0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9556291	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9561315	0.90[CEU][hapmap]
rs9561322	0.91[CEU][hapmap]
rs9561326	0.91[CEU][hapmap]
rs9561329	0.91[CEU][hapmap]
rs9561336	0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[EUR][1000 genomes]
rs9561340	0.91[CEU][hapmap];0.90[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9561346	0.90[CHB][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561354	0.84[CEU][hapmap]
rs9561358	0.83[CEU][hapmap]
rs9561360	0.83[CEU][hapmap]
rs973302	1.00[CEU][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs974542	0.82[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.82[LWK][hapmap];0.92[MEX][hapmap];0.82[MKK][hapmap];0.84[ASN][1000 genomes]
rs974543	0.84[ASN][1000 genomes]
rs974544	0.84[ASN][1000 genomes]
rs996460	0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs996461	0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs996462	0.82[ASN][1000 genomes]
rs996463	1.00[ASW][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1048843	chr13:94064931-94103524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94058600-94077600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94073400-94081600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr13:94073400-94086000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:94073600-94080600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:94076000-94077800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:94076600-94082400	Weak transcription	Fetal Lung	lung
7	chr13:94076800-94077800	Weak transcription	Adipose Nuclei	Adipose
8	chr13:94076800-94082000	Weak transcription	Ovary	ovary
9	chr13:94077400-94077600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:94077400-94078200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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