Variant report

Variant	rs9561315
Chromosome Location	chr13:93989725-93989726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:93989647..93991913-chr13:93995033..93997878,2	K562	blood:
2	chr13:93980175..93981907-chr13:93988845..93990835,2	K562	blood:
3	chr13:93980175..93982832-chr13:93987646..93990345,3	K562	blood:
4	chr13:93975150..93977138-chr13:93989003..93991236,2	K562	blood:
5	chr13:93988036..93992700-chr13:93993487..93997832,6	K562	blood:
6	chr13:93971681..93973472-chr13:93989154..93990782,2	K562	blood:
7	chr13:93987672..93989845-chr13:93991078..93993426,2	K562	blood:
8	chr13:93989696..93991839-chr13:94003086..94004626,2	K562	blood:

No data

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11618902	0.82[JPT][hapmap]
rs11618940	0.82[JPT][hapmap]
rs11619144	0.82[JPT][hapmap]
rs1359198	1.00[CEU][hapmap]
rs1359199	0.83[JPT][hapmap]
rs1445266	1.00[CEU][hapmap]
rs17234460	1.00[CEU][hapmap]
rs17300206	1.00[CEU][hapmap]
rs1980727	0.90[CEU][hapmap]
rs2025947	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2038727	1.00[CEU][hapmap]
rs2762082	0.90[CEU][hapmap]
rs3814277	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4771875	1.00[CEU][hapmap]
rs4773745	1.00[CEU][hapmap]
rs4773747	1.00[CEU][hapmap]
rs72639035	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7329539	1.00[CEU][hapmap]
rs7332108	0.83[JPT][hapmap]
rs7338402	0.90[CEU][hapmap]
rs7987449	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7994277	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7994395	0.82[JPT][hapmap]
rs7997302	1.00[CEU][hapmap]
rs7999016	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8002366	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs876808	1.00[CEU][hapmap]
rs9301870	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9301877	1.00[CEU][hapmap]
rs9516223	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9516225	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9524014	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9524016	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9524018	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9524038	1.00[CEU][hapmap]
rs9524039	1.00[CEU][hapmap]
rs9524059	0.80[EUR][1000 genomes]
rs9524070	0.90[CEU][hapmap]
rs9556280	0.86[JPT][hapmap]
rs9556286	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9556289	1.00[CEU][hapmap]
rs9561312	0.86[JPT][hapmap]
rs9561316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561322	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561326	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9561329	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9561334	0.85[CEU][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes]
rs9561336	1.00[CEU][hapmap]
rs9561340	1.00[CEU][hapmap]
rs9561346	0.88[CEU][hapmap]
rs973302	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv900919	chr13:93957816-94030693	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93988200-93991600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:93989000-93990000	Enhancers	Fetal Brain Male	brain
3	chr13:93989000-93990800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:93989000-93990800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:93989600-93990600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:93989600-93990800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:93989600-93991800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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