Variant report

Variant	rs9561334
Chromosome Location	chr13:94034052-94034053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1359198	0.86[CEU][hapmap]
rs1445266	1.00[CEU][hapmap]
rs17234460	0.86[CEU][hapmap]
rs17300206	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2025947	0.87[CEU][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs2038727	0.86[CEU][hapmap]
rs3814277	0.86[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs4771875	0.85[CEU][hapmap]
rs4773745	0.86[CEU][hapmap]
rs4773747	0.86[CEU][hapmap]
rs72639035	0.91[EUR][1000 genomes]
rs7329539	0.86[CEU][hapmap]
rs7987449	0.88[EUR][1000 genomes]
rs7994277	0.86[CEU][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes]
rs7997302	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7999016	0.86[EUR][1000 genomes]
rs8002366	0.87[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes]
rs876808	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs9301870	0.89[EUR][1000 genomes]
rs9301877	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs9516223	0.89[EUR][1000 genomes]
rs9516225	0.86[CEU][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs9516228	0.83[EUR][1000 genomes]
rs9523999	1.00[AFR][1000 genomes]
rs9524009	1.00[AFR][1000 genomes]
rs9524014	0.89[EUR][1000 genomes]
rs9524016	0.91[EUR][1000 genomes]
rs9524018	0.91[EUR][1000 genomes]
rs9524029	0.87[EUR][1000 genomes]
rs9524038	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs9524039	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs9524059	0.80[EUR][1000 genomes]
rs9524076	1.00[AFR][1000 genomes]
rs9556286	0.91[EUR][1000 genomes]
rs9556289	0.85[CEU][hapmap]
rs9561315	0.85[CEU][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes]
rs9561316	0.92[EUR][1000 genomes]
rs9561322	0.86[CEU][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs9561326	0.86[CEU][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs9561329	0.86[CEU][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs9561336	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs9561340	0.87[CEU][hapmap]
rs9561346	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94008800-94042400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:94009400-94040400	Weak transcription	Aorta	Aorta
3	chr13:94014200-94038800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:94030800-94038600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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