Variant report

Variant	rs9524029
Chromosome Location	chr13:94029148-94029149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12430278	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12865188	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1323972	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1323989	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1359198	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1408208	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1408211	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1445266	0.82[EUR][1000 genomes]
rs17234460	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17300206	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1924383	0.84[EUR][1000 genomes]
rs1980727	0.83[EUR][1000 genomes]
rs2038727	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2762082	0.82[EUR][1000 genomes]
rs2762092	0.82[EUR][1000 genomes]
rs2762120	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2762122	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4771875	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4773743	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4773744	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4773745	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4773746	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4773747	0.86[EUR][1000 genomes]
rs723850	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72640517	0.83[EUR][1000 genomes]
rs7329539	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7338402	0.83[EUR][1000 genomes]
rs7997302	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs876808	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9301877	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9516228	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9524036	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9524038	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9524039	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9524045	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9524051	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9524053	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9524058	0.83[EUR][1000 genomes]
rs9524061	0.83[EUR][1000 genomes]
rs9556289	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9561334	0.87[EUR][1000 genomes]
rs9561335	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9561336	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561340	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9561346	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9561347	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv900919	chr13:93957816-94030693	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94008800-94042400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:94009400-94040400	Weak transcription	Aorta	Aorta
3	chr13:94014200-94038800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:94026000-94030600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:94028600-94029800	Enhancers	Colon Smooth Muscle	Colon

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