Variant report

Variant	rs1324212
Chromosome Location	chr9:79062700-79062701
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:79062041..79063533-chr9:79272880..79274341,6	MCF-7	breast:
2	chr9:79062570..79065209-chr9:79073838..79075635,2	MCF-7	breast:
3	chr9:79062474..79063044-chr9:79273108..79273738,2	K562	blood:
4	chr9:79061368..79063776-chr9:79272393..79274903,3	MCF-7	breast:
5	chr9:79062119..79063115-chr9:79277138..79277991,2	MCF-7	breast:
6	chr9:79062067..79063554-chr9:79273134..79274136,17	MCF-7	breast:
7	chr9:79062485..79063050-chr9:79074982..79075830,2	K562	blood:
8	chr9:79062552..79063515-chr9:79319220..79320201,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000187210	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10116800	1.00[CHB][hapmap]
rs10869770	1.00[CHB][hapmap]
rs10869771	1.00[CHB][hapmap]
rs10869781	0.85[ASN][1000 genomes]
rs11144870	1.00[CHB][hapmap]
rs11144887	1.00[CHB][hapmap]
rs11144905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11144908	0.85[ASN][1000 genomes]
rs11144909	0.85[ASN][1000 genomes]
rs11793613	1.00[CHB][hapmap]
rs12351617	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12378822	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12380332	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55740812	0.80[ASN][1000 genomes]
rs57339182	0.90[ASN][1000 genomes]
rs57429014	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58651349	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59322809	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62564441	0.87[EUR][1000 genomes]
rs62564442	0.90[EUR][1000 genomes]
rs62564444	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62564446	0.90[ASN][1000 genomes]
rs62564449	0.85[ASN][1000 genomes]
rs62564454	0.85[ASN][1000 genomes]
rs62565109	0.80[ASN][1000 genomes]
rs62567918	0.80[ASN][1000 genomes]
rs6560524	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7023191	0.86[CHB][hapmap]
rs7035385	1.00[CHB][hapmap]
rs7038009	1.00[CHB][hapmap]
rs7854540	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7875575	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv520423	chr9:79047117-79065299	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79058000-79062800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:79062200-79062800	Enhancers	Fetal Intestine Small	intestine
3	chr9:79062200-79063000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:79062200-79063000	Enhancers	Stomach Mucosa	stomach
5	chr9:79062200-79063000	Enhancers	HSMM	muscle
6	chr9:79062200-79064200	Enhancers	Fetal Brain Male	brain
7	chr9:79062400-79063000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:79062400-79063000	Enhancers	Fetal Intestine Large	intestine
9	chr9:79062600-79062800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr9:79062600-79062800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:79062600-79062800	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr9:79062600-79062800	Enhancers	NH-A	brain
13	chr9:79062600-79063000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:79062600-79063000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:79062600-79063000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:79062600-79063000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr9:79062600-79063000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr9:79062600-79063000	Enhancers	Primary B cells from peripheral blood	blood
19	chr9:79062600-79063000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr9:79062600-79063000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:79062600-79063000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:79062600-79063000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:79062600-79063000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:79062600-79063000	Enhancers	Adipose Nuclei	Adipose
25	chr9:79062600-79063000	Enhancers	Brain Hippocampus Middle	brain
26	chr9:79062600-79063000	Active TSS	Colonic Mucosa	Colon
27	chr9:79062600-79063000	Active TSS	Colon Smooth Muscle	Colon
28	chr9:79062600-79063000	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr9:79062600-79063000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr9:79062600-79063000	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr9:79062600-79063000	Enhancers	Fetal Stomach	stomach
32	chr9:79062600-79063000	Flanking Active TSS	Rectal Smooth Muscle	rectum
33	chr9:79062600-79063000	Active TSS	Stomach Smooth Muscle	stomach
34	chr9:79062600-79063000	Flanking Active TSS	GM12878-XiMat	blood
35	chr9:79062600-79063000	Enhancers	HSMMtube	muscle
36	chr9:79062600-79063000	Flanking Active TSS	NHDF-Ad	bronchial
37	chr9:79062600-79063000	Enhancers	Osteobl	bone
38	chr9:79062600-79063200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:79062600-79063400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:79062600-79065800	Weak transcription	A549	lung

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