Variant report

Variant	rs55740812
Chromosome Location	chr9:79053064-79053065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10116800	0.94[ASN][1000 genomes]
rs10118954	0.94[ASN][1000 genomes]
rs10119732	0.89[ASN][1000 genomes]
rs10125012	0.94[ASN][1000 genomes]
rs10125667	0.94[ASN][1000 genomes]
rs10781358	0.94[ASN][1000 genomes]
rs10781359	0.89[ASN][1000 genomes]
rs10781360	0.94[ASN][1000 genomes]
rs10869770	0.94[ASN][1000 genomes]
rs10869774	0.89[ASN][1000 genomes]
rs10869781	0.83[ASN][1000 genomes]
rs11144870	0.94[ASN][1000 genomes]
rs11144875	0.94[ASN][1000 genomes]
rs11144878	0.94[ASN][1000 genomes]
rs11144881	0.94[ASN][1000 genomes]
rs11144887	0.94[ASN][1000 genomes]
rs11144894	0.89[ASN][1000 genomes]
rs11144897	0.89[ASN][1000 genomes]
rs11144905	0.80[ASN][1000 genomes]
rs11144908	0.83[ASN][1000 genomes]
rs11144909	0.83[ASN][1000 genomes]
rs1129399	0.94[ASN][1000 genomes]
rs11548954	0.82[ASN][1000 genomes]
rs11791951	0.94[ASN][1000 genomes]
rs11793613	0.94[ASN][1000 genomes]
rs11794019	0.94[ASN][1000 genomes]
rs12156473	0.94[ASN][1000 genomes]
rs12351617	0.83[ASN][1000 genomes]
rs12377856	0.94[ASN][1000 genomes]
rs12377878	0.94[ASN][1000 genomes]
rs12380332	0.89[ASN][1000 genomes]
rs12380522	0.85[ASN][1000 genomes]
rs1324212	0.80[ASN][1000 genomes]
rs1324213	0.94[ASN][1000 genomes]
rs1951910	0.94[ASN][1000 genomes]
rs3187236	0.85[ASN][1000 genomes]
rs4571791	0.94[ASN][1000 genomes]
rs57339182	0.89[ASN][1000 genomes]
rs57429014	0.80[ASN][1000 genomes]
rs57480680	0.94[ASN][1000 genomes]
rs58136435	0.89[ASN][1000 genomes]
rs58651349	0.83[ASN][1000 genomes]
rs59322809	0.83[ASN][1000 genomes]
rs59424752	0.85[ASN][1000 genomes]
rs62564441	0.85[ASN][1000 genomes]
rs62564442	0.85[ASN][1000 genomes]
rs62564444	0.80[ASN][1000 genomes]
rs62564446	0.89[ASN][1000 genomes]
rs62564449	0.83[ASN][1000 genomes]
rs62564454	0.83[ASN][1000 genomes]
rs62565109	0.88[ASN][1000 genomes]
rs62567918	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62567919	0.82[ASN][1000 genomes]
rs62568690	0.94[ASN][1000 genomes]
rs62568692	0.94[ASN][1000 genomes]
rs6560516	0.94[ASN][1000 genomes]
rs6560524	0.83[ASN][1000 genomes]
rs7023191	0.85[ASN][1000 genomes]
rs7025942	0.94[ASN][1000 genomes]
rs7026067	0.94[ASN][1000 genomes]
rs7029439	0.94[ASN][1000 genomes]
rs7035385	0.94[ASN][1000 genomes]
rs7037345	0.85[ASN][1000 genomes]
rs7038009	0.94[ASN][1000 genomes]
rs7038056	0.85[ASN][1000 genomes]
rs7040138	0.94[ASN][1000 genomes]
rs7041690	0.94[ASN][1000 genomes]
rs7047489	0.94[ASN][1000 genomes]
rs7049245	0.94[ASN][1000 genomes]
rs7851616	0.94[ASN][1000 genomes]
rs7852884	0.94[ASN][1000 genomes]
rs7853410	0.94[ASN][1000 genomes]
rs7854540	0.89[ASN][1000 genomes]
rs7859327	0.94[ASN][1000 genomes]
rs7875575	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv3451027	chr9:79021447-79056132	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv520423	chr9:79047117-79065299	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79049400-79055400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:79049400-79055400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:79049400-79055400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:79049400-79055400	Weak transcription	Osteobl	bone
5	chr9:79049400-79056400	Weak transcription	NH-A	brain
6	chr9:79051400-79056600	Weak transcription	HepG2	liver
7	chr9:79052600-79054400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:79052600-79056600	Enhancers	GM12878-XiMat	blood
9	chr9:79053000-79053400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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