Variant report

Variant	rs1324578
Chromosome Location	chr6:33900681-33900682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12665045	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs17535965	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17596180	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35549176	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36095346	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66891384	0.85[EUR][1000 genomes]
rs747889	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33894600-33902600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:33898000-33903000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:33898800-33903000	Weak transcription	Fetal Kidney	kidney
4	chr6:33900600-33900800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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