Variant report

Variant	rs36095346
Chromosome Location	chr6:33882737-33882738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33881960..33884632-chr6:33890254..33892138,2	MCF-7	breast:
2	chr6:33878954..33881384-chr6:33881544..33883413,2	MCF-7	breast:
3	chr6:33868116..33871779-chr6:33880960..33883614,3	K562	blood:
4	chr6:33870279..33872339-chr6:33881420..33883614,2	K562	blood:
5	chr6:33875835..33878450-chr6:33882484..33884000,2	K562	blood:
6	chr6:33881007..33883115-chr6:33890110..33892674,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ITPR3-1	chr6:33882234-33885968	XLOC_005263
2	lnc-ITPR3-1	chr6:33882503-33885968	XLOC_005263
3	lnc-ITPR3-1	chr6:33882503-33885984	XLOC_005263
4	lnc-ITPR3-1	chr6:33882503-33885985	ENSG00000233183
5	lnc-ITPR3-1	chr6:33882234-33883172	NONHSAT111951
6	lnc-ITPR3-1	chr6:33881865-33883172	NONHSAT109994

No data

Variant related genes	Relation type
ENSG00000233183	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12211189	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12665045	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1324578	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17535965	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17596180	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2499759	0.93[ASN][1000 genomes]
rs35549176	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66891384	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs747889	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33865600-33883000	Weak transcription	Esophagus	oesophagus
2	chr6:33873000-33884000	Enhancers	Fetal Thymus	thymus
3	chr6:33873400-33883800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr6:33874200-33889200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:33878000-33883600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:33878400-33883200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:33879800-33883800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:33879800-33883800	Enhancers	Fetal Stomach	stomach
9	chr6:33880400-33883000	Weak transcription	Fetal Lung	lung
10	chr6:33880600-33883200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:33880800-33883800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:33881000-33883800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:33881200-33884000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:33881400-33883400	Enhancers	Thymus	Thymus
15	chr6:33881400-33883600	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:33881400-33883600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:33881400-33883800	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:33881600-33883400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr6:33881800-33883000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:33881800-33883400	Enhancers	Primary B cells from cord blood	blood
21	chr6:33882000-33883000	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr6:33882000-33883200	Enhancers	Spleen	Spleen
23	chr6:33882000-33883400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:33882000-33883600	Enhancers	GM12878-XiMat	blood
25	chr6:33882200-33882800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr6:33882200-33883000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:33882200-33883000	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr6:33882200-33883400	Enhancers	Adipose Nuclei	Adipose
29	chr6:33882200-33883400	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr6:33882200-33883800	Enhancers	Fetal Muscle Leg	muscle
31	chr6:33882400-33883000	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr6:33882400-33883000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
33	chr6:33882400-33883400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr6:33882600-33882800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:33882600-33883000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr6:33882600-33883200	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr6:33882600-33883200	Enhancers	Colon Smooth Muscle	Colon
38	chr6:33882600-33883200	Enhancers	HSMMtube	muscle
39	chr6:33882600-33883800	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr6:33882600-33883800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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