Variant report

Variant	rs747889
Chromosome Location	chr6:33878775-33878776
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33864193..33866303-chr6:33876209..33879014,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249346	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12211189	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12665045	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1324578	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17535965	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17596180	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2499759	0.93[ASN][1000 genomes]
rs35549176	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36095346	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66891384	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33865600-33883000	Weak transcription	Esophagus	oesophagus
2	chr6:33872800-33878800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:33873000-33884000	Enhancers	Fetal Thymus	thymus
4	chr6:33873400-33883800	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:33873800-33879000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:33873800-33882000	Weak transcription	Spleen	Spleen
7	chr6:33874000-33881800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:33874200-33882200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:33874200-33889200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:33875400-33881400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:33875400-33881400	Weak transcription	Thymus	Thymus
12	chr6:33876000-33880800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:33876400-33879200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:33876400-33880000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:33876600-33881800	Weak transcription	Primary B cells from cord blood	blood
16	chr6:33876600-33882000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:33876800-33880200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:33876800-33882000	Weak transcription	GM12878-XiMat	blood
19	chr6:33877000-33881600	Weak transcription	Primary T cells from cord blood	blood
20	chr6:33877400-33880000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:33877800-33881400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:33878000-33879600	Weak transcription	Fetal Intestine Small	intestine
23	chr6:33878000-33879800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:33878000-33880000	Weak transcription	Fetal Intestine Large	intestine
25	chr6:33878000-33883600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr6:33878400-33880400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:33878400-33883200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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