Variant report

Variant	rs17596180
Chromosome Location	chr6:33876600-33876601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33864193..33866303-chr6:33876209..33879014,2	MCF-7	breast:
2	chr6:33869569..33871113-chr6:33874959..33876852,2	K562	blood:
3	chr6:33864121..33865867-chr6:33876208..33878282,2	MCF-7	breast:
4	chr6:33871240..33875960-chr6:33876004..33878253,4	K562	blood:
5	chr6:33874668..33878393-chr6:33879974..33881906,3	K562	blood:
6	chr6:33868935..33870762-chr6:33875673..33878482,2	MCF-7	breast:
7	chr6:33875969..33877770-chr6:33880104..33881906,2	K562	blood:
8	chr6:33875835..33878450-chr6:33882484..33884000,2	K562	blood:
9	chr6:33871826..33874776-chr6:33875956..33877869,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000249346	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12211189	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12665045	0.86[CEU][hapmap];0.84[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1324578	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17535965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2499759	0.83[ASN][1000 genomes]
rs35549176	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36095346	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66891384	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs747889	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33865600-33883000	Weak transcription	Esophagus	oesophagus
2	chr6:33868200-33877800	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:33870800-33876600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:33872800-33878000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:33872800-33878800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:33873000-33884000	Enhancers	Fetal Thymus	thymus
7	chr6:33873200-33876600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:33873200-33877400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:33873200-33878200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:33873400-33876800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:33873400-33878000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:33873400-33878000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:33873400-33878400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:33873400-33883800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr6:33873800-33877000	Enhancers	Primary T cells from cord blood	blood
16	chr6:33873800-33879000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr6:33873800-33882000	Weak transcription	Spleen	Spleen
18	chr6:33874000-33881800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:33874200-33876800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:33874200-33882200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:33874200-33889200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:33874400-33877800	Enhancers	Liver	Liver
23	chr6:33874600-33878000	Enhancers	Fetal Intestine Large	intestine
24	chr6:33875000-33876600	Enhancers	Primary B cells from cord blood	blood
25	chr6:33875000-33876800	Enhancers	GM12878-XiMat	blood
26	chr6:33875400-33881400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:33875400-33881400	Weak transcription	Thymus	Thymus
28	chr6:33875600-33876600	Enhancers	Primary B cells from peripheral blood	blood
29	chr6:33876000-33880800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:33876200-33876800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:33876200-33877400	Weak transcription	K562	blood
32	chr6:33876400-33877400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:33876400-33877600	Weak transcription	Fetal Intestine Small	intestine
34	chr6:33876400-33879200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:33876400-33880000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr6:33876600-33878000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:33876600-33881800	Weak transcription	Primary B cells from cord blood	blood
38	chr6:33876600-33882000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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