Variant report

Variant	rs13253498
Chromosome Location	chr8:87926188-87926189
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10955130	0.89[EUR][1000 genomes]
rs13262224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28512235	1.00[AFR][1000 genomes]
rs28689187	1.00[AFR][1000 genomes]
rs2934948	1.00[AFR][1000 genomes]
rs4279611	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4604452	0.83[AMR][1000 genomes]
rs4644279	0.83[AMR][1000 genomes]
rs4960932	0.82[EUR][1000 genomes]
rs4961004	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6415426	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6468558	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6468571	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6468610	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6468611	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6986314	1.00[AFR][1000 genomes]
rs7002729	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003658	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7825717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7825908	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7826182	0.85[EUR][1000 genomes]
rs7829765	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7835840	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7841642	0.85[EUR][1000 genomes]
rs7845923	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9774553	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv817372	chr8:87746712-88292389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1015760	chr8:87750555-88304604	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv891158	chr8:87791641-87956609	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831383	chr8:87827274-88004897	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1020699	chr8:87880120-88734779	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv539663	chr8:87880120-88734779	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87924600-87926200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:87925400-87926200	Enhancers	Brain Angular Gyrus	brain
3	chr8:87925400-87926200	Enhancers	Brain Hippocampus Middle	brain

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